Using RefSeq Release: 59
QUERY: Homo sapiens hair growth associated (HR), transcript variant 1, mRNA. (NM_005144)
4 hits found.
HIT/REFERENCE: Sus scrofa hairless homolog (mouse) (HR), mRNA. (NM_001083930)
MAQPTASAQKLVRPIRAVCRILQIPESDPSNLRP NM_005144, [345, 446]
MAQPTASAQKLVRPIRAVCRILQIPESDPSNLRP
MAQPTASAQKLVRPIRAVCRILQIPESDPSNLRP NM_001083930, [586, 687]
Estimated uPEP Ka/Ks ratio: 0.0000 (Ka: 0.0000, Ks: 0.0849)
Unable to estimate Ka/Ks ratio of CDS: Query and reference coding sequences of unequal size (3567 vs. 3531).
The unformatted aligned sequence can be viewed here.
Heatmap representation of NM_005144:
Heatmap representation of NM_001083930:
HIT/REFERENCE: Trivial hit. Same transcript as query sequence (NM_005144)
HIT/REFERENCE: Homo sapiens hair growth associated (HR), transcript variant 2, mRNA. (NM_018411)
MAQPTASAQKLVRPIRAVCRILQIPESDPSNLRP NM_005144, [345, 446]
MAQPTASAQKLVRPIRAVCRILQIPESDPSNLRP
MAQPTASAQKLVRPIRAVCRILQIPESDPSNLRP NM_018411, [345, 446]
Estimated uPEP Ka/Ks ratio: N/A (Ka: 0.0000, Ks: 0.0000)
Unable to estimate Ka/Ks ratio of CDS: Query and reference coding sequences of unequal size (3567 vs. 3402).
The unformatted aligned sequence can be viewed here.
Heatmap representation of NM_005144:
Heatmap representation of NM_018411:
HIT/REFERENCE: Mus musculus hairless (Hr), mRNA. (NM_021877)
MAQPTASAQKLVRPIRAVCRILQIPESDPSNLRP NM_005144, [345, 446]
MAQPTA AQKLVRPIRAVCRILQIPESDPSNLRP
MAQPTALAQKLVRPIRAVCRILQIPESDPSNLRP NM_021877, [402, 503]
Estimated uPEP Ka/Ks ratio: 0.0263 (Ka: 0.0118, Ks: 0.4498)
Unable to estimate Ka/Ks ratio of CDS: Query and reference coding sequences of unequal size (3567 vs. 3546).
The unformatted aligned sequence can be viewed here.
Heatmap representation of NM_005144:
Heatmap representation of NM_021877:
The heatmap diagrams can be downloaded by right-clicking on the image and selecting "Save Picture As..." (or "Save Image As..." in Firefox)