Using RefSeq Release: 59
QUERY: User Entered
10 hits found.
HIT/REFERENCE: Homo sapiens asparagine synthetase domain containing 1 (ASNSD1), mRNA. (NM_019048)
MPSRGTRPEDSSVLIPTDNSTPHKEDLSSKIKEQKIVVDELSNLKKNRKVYRQQQNSNIFFLADRTEMLSESKNILDELKKEYQEIENLDKTKIKK Query, [102, 389]
MPSRGTRPEDSSVLIPTDNSTPHKEDLSSKIKEQKIVVDELSNLKKNRKVYRQQQNSNIFFLADRTEMLSESKNILDELKKEYQEIENLDKTKIKK
MPSRGTRPEDSSVLIPTDNSTPHKEDLSSKIKEQKIVVDELSNLKKNRKVYRQQQNSNIFFLADRTEMLSESKNILDELKKEYQEIENLDKTKIKK NM_019048, [123, 410]
Estimated uPEP Ka/Ks ratio: N/A (Ka: 0.0000, Ks: 0.0000)
Unable to estimate Ka/Ks ratio of CDS: Unable to define CDS from user entered sequence.
The unformatted aligned sequence can be viewed here.
Heatmap representation of Query:
Heatmap representation of NM_019048:
HIT/REFERENCE: Bos taurus asparagine synthetase domain containing 1 (ASNSD1), mRNA. (NM_001034680)
MPSRGTRPEDSSVLIPTDNSTPHKEDLSSKIKEQKIVVDELSNLKKNRKVYRQQQNSNIFFLADRTEMLSESKNILDELKKEYQEIENLDKTKIKK Query, [102, 389]
MPSRG RPED + +P ++ST HKE+LSSKIKEQK+VVDELSNLKKNRKVYRQQQNSNIFFLADRTEMLSESKN LDEL+KEYQE+EN +KTKIKK
MPSRGERPEDGAGPVPAESSTLHKEELSSKIKEQKVVVDELSNLKKNRKVYRQQQNSNIFFLADRTEMLSESKNTLDELRKEYQELENSEKTKIKK NM_001034680, [74, 361]
Estimated uPEP Ka/Ks ratio: 0.3216 (Ka: 0.0981, Ks: 0.3050)
Unable to estimate Ka/Ks ratio of CDS: Unable to define CDS from user entered sequence.
The unformatted aligned sequence can be viewed here.
Heatmap representation of Query:
Heatmap representation of NM_001034680:
HIT/REFERENCE: Rattus norvegicus asparagine synthetase domain containing 1 (Asnsd1), mRNA. (NM_001106763)
MPSRGTRPEDSSVLIPTDNSTPHKEDLSSKIKEQKIVVDELSNLKKNRKVYRQQQNSNIFFLADRTEMLSESKNILDELKKEYQEIENLDKTKIK Query, [102, 386]
MPS P DS+ PT ST H E LSSKIKEQK++VDELSNLKKNRKVY+QQQNSNIFFL +RT+MLSESKN LDEL+K+YQE+EN + TK+K
MPSGAEHPGDSAAPGPTRTSTAHAEALSSKIKEQKVIVDELSNLKKNRKVYKQQQNSNIFFLEERTKMLSESKNKLDELRKDYQEVENSETTKVK NM_001106763, [58, 342]
Estimated uPEP Ka/Ks ratio: 0.3714 (Ka: 0.1830, Ks: 0.4927)
Unable to estimate Ka/Ks ratio of CDS: Unable to define CDS from user entered sequence.
The unformatted aligned sequence can be viewed here.
Heatmap representation of Query:
Heatmap representation of NM_001106763:
HIT/REFERENCE: Mus musculus asparagine synthetase domain containing 1 (Asnsd1), mRNA. (NM_133728)
MPSRGTRPEDSSVLIPTDNSTPHKEDLSSKIKEQKIVVDELSNLKKNRKVYRQQQNSNIFFLADRTEMLSESKNILDELKKEYQEIENLDKTKIKK*ST Query, [102, 398]
MPS G + + P ST H E LSSKIKEQKI+VDELSNLKKNR+VY+QQQNSNIFFL DRT++ SESKN LDELKKEYQ +E + TK+K ST
MPSSGVHADGRAAPGPPHTSTAHAESLSSKIKEQKIIVDELSNLKKNRRVYKQQQNSNIFFLEDRTKIFSESKNTLDELKKEYQALETSETTKVKTQST NM_133728, [81, 377]
Unable to estimate Ka/Ks ratio of uPEP.
Unable to estimate Ka/Ks ratio of CDS: Unable to define CDS from user entered sequence.
The unformatted aligned sequence can be viewed here.
Heatmap representation of Query:
Heatmap representation of NM_133728:
HIT/REFERENCE: Gallus gallus asparagine synthetase domain containing 1 (ASNSD1), mRNA. (NM_001006509)
HKEDLSSKIKEQKIVVDELSNLKKNRKVYRQQQNSNIFFLADRTEMLSESKNILDELKKEYQEIENLDKTKIKK Query, [168, 389]
+K +LS +IKEQK+VVDELSNLKKNRKVYRQQ NSNIFFL DRTE LS+ KN LD+LKK +QE+EN +KTK+KK
YKGELSRRIKEQKVVVDELSNLKKNRKVYRQQPNSNIFFLVDRTEALSQCKNTLDQLKKAHQELENSEKTKVKK NM_001006509, [68, 289]
Estimated uPEP Ka/Ks ratio: 0.3339 (Ka: 0.1641, Ks: 0.4915)
Unable to estimate Ka/Ks ratio of CDS: Unable to define CDS from user entered sequence.
The unformatted aligned sequence can be viewed here.
Heatmap representation of Query:
Heatmap representation of NM_001006509:
HIT/REFERENCE: Macaca mulatta asparagine synthetase domain containing 1 (ASNSD1), mRNA. (NM_001194770)
QTEQKCCLRARIYWM Query, [289, 333]
+TEQKC LRA++YWM
RTEQKCYLRAKVYWM NM_001194770, [181, 225]
Estimated uPEP Ka/Ks ratio: 31.2304 (Ka: 0.1737, Ks: 0.0056)
Unable to estimate Ka/Ks ratio of CDS: Unable to define CDS from user entered sequence.
The unformatted aligned sequence can be viewed here.
Heatmap representation of Query:
Heatmap representation of NM_001194770:
HIT/REFERENCE: Macaca mulatta asparagine synthetase domain containing 1 (ASNSD1), mRNA. (NM_001194770)
MPSRGTRPEDSSVLIPTDNSTPHKEDLSSKIKEQKIVVDELSNLKKNRKVYRQQQNSNIFFL Query, [102, 287]
MP+RGTRPEDS VLIPTDNSTPHKEDLSSKIKEQKIVVDELSNLKKNR + + ++++
MPNRGTRPEDSPVLIPTDNSTPHKEDLSSKIKEQKIVVDELSNLKKNRTEQKCYLRAKVYWM NM_001194770, [40, 225]
Estimated uPEP Ka/Ks ratio: 1.9174 (Ka: 0.2109, Ks: 0.1100)
Unable to estimate Ka/Ks ratio of CDS: Unable to define CDS from user entered sequence.
The unformatted aligned sequence can be viewed here.
Heatmap representation of Query:
Heatmap representation of NM_001194770:
HIT/REFERENCE: Homo sapiens asparagine synthetase domain containing 1 (ASNSD1), mRNA. (NM_019048)
MNFLTLRRIGKYIGNNRTAIYSFLQTEQKCCLRARIYWM Query, [217, 333]
MNFLTLRRIGKYIGNNRTAIYSFLQTEQKCCLRARIYWM
MNFLTLRRIGKYIGNNRTAIYSFLQTEQKCCLRARIYWM NM_019048, [238, 354]
Estimated uPEP Ka/Ks ratio: N/A (Ka: 0.0000, Ks: 0.0000)
Unable to estimate Ka/Ks ratio of CDS: Unable to define CDS from user entered sequence.
The unformatted aligned sequence can be viewed here.
Heatmap representation of Query:
Heatmap representation of NM_019048:
HIT/REFERENCE: Oryza sativa Japonica Group Os12g0574900 (Os12g0574900) mRNA, complete cds. (NM_001073636)
ERGNVFLWNGEIFSGIKVEAEENDTQILFNYLSSC Query, [615, 719]
+ GNV ++NGEI+ G+ V ++NDTQ L + L SC
QSGNVLVYNGEIYGGVHVADDQNDTQSLLSSLESC NM_001073636, [378, 482]
Estimated uPEP Ka/Ks ratio: 0.0037 (Ka: 0.3630, Ks: 99.0000)
Unable to estimate Ka/Ks ratio of CDS: Unable to define CDS from user entered sequence.
The unformatted aligned sequence can be viewed here.
Heatmap representation of Query:
Heatmap representation of NM_001073636:
HIT/REFERENCE: Macaca mulatta asparagine synthetase domain containing 1 (ASNSD1), mRNA. (NM_001194770)
MLSESKNILDELKKEYQEIENLDKTKIKK Query, [303, 389]
MLSESK+ILDELKKEYQEIENL+KTKIKK
MLSESKSILDELKKEYQEIENLEKTKIKK NM_001194770, [195, 281]
Estimated uPEP Ka/Ks ratio: 0.4803 (Ka: 0.0352, Ks: 0.0733)
Unable to estimate Ka/Ks ratio of CDS: Unable to define CDS from user entered sequence.
The unformatted aligned sequence can be viewed here.
Heatmap representation of Query:
Heatmap representation of NM_001194770:
The heatmap diagrams can be downloaded by right-clicking on the image and selecting "Save Picture As..." (or "Save Image As..." in Firefox)